Ecosystem#

Here we highlight projects that depend on scvi-tools.

scArches#

scArches allows for the integration of new "query" data into reference atlases produced with conditional deep generative models like scVI, scANVI, and totalVI.

scdefg: scvi DE Flask GUI#

A GitHub repository for a single page Flask UI that allows you to quickly select cell groups and perform differential expression on single cell RNA sequencing data using scvi-tools. Application to C. Elegans data.